Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Mvan_1111PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_2595 integrase, catalytic region. (273 aa)    
Predicted Functional Partners:
Mvan_1110
PFAM: transposase IS3/IS911 family protein; KEGG: mmc:Mmcs_0845 transposase IS3/IS911.
 
   
 0.930
Mvan_0578
PFAM: transposase IS3/IS911 family protein; KEGG: mmc:Mmcs_0845 transposase IS3/IS911.
 
   
 0.793
Mvan_0453
KEGG: mmc:Mmcs_0845 transposase IS3/IS911.
 
   
 0.754
Mvan_1112
KEGG: mmc:Mmcs_2595 integrase, catalytic region.
 
    
0.431
Mvan_0306
PFAM: Integrase, catalytic region; KEGG: cgb:cg1716 transposase.
 
   
 0.404
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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