node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Mvan_0839 | rplC | Mvan_0839 | Mvan_1305 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
Mvan_0839 | rplD | Mvan_0839 | Mvan_1306 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.999 |
Mvan_0839 | rplE | Mvan_0839 | Mvan_1334 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
Mvan_0839 | rplN | Mvan_0839 | Mvan_1332 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
Mvan_0839 | rplV | Mvan_0839 | Mvan_1310 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.999 |
Mvan_0839 | rplW | Mvan_0839 | Mvan_1307 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
Mvan_0839 | rplX | Mvan_0839 | Mvan_1333 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
Mvan_0839 | rpmC | Mvan_0839 | Mvan_1313 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | PFAM: ribosomal protein L29; KEGG: mmc:Mmcs_1021 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
Mvan_0839 | rpsH | Mvan_0839 | Mvan_1336 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
Mvan_0839 | rpsZ | Mvan_0839 | Mvan_1335 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.999 |
rplC | Mvan_0839 | Mvan_1305 | Mvan_0839 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | 0.999 |
rplC | rplD | Mvan_1305 | Mvan_1306 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplE | Mvan_1305 | Mvan_1334 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
rplC | rplN | Mvan_1305 | Mvan_1332 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
rplC | rplV | Mvan_1305 | Mvan_1310 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.999 |
rplC | rplW | Mvan_1305 | Mvan_1307 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
rplC | rplX | Mvan_1305 | Mvan_1333 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
rplC | rpmC | Mvan_1305 | Mvan_1313 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | PFAM: ribosomal protein L29; KEGG: mmc:Mmcs_1021 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
rplC | rpsH | Mvan_1305 | Mvan_1336 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.997 |
rplC | rpsZ | Mvan_1305 | Mvan_1335 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.993 |