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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_1663KEGG: mmc:Mmcs_1285 hypothetical protein. (105 aa)    
Predicted Functional Partners:
Mvan_5680
PFAM: copper resistance D domain protein; KEGG: mmc:Mmcs_5053 copper resistance D.
  
    0.699
Mvan_1276
KEGG: mmc:Mmcs_0981 hypothetical protein.
 
  
 0.668
Mvan_2430
KEGG: mmc:Mmcs_2158 putative conserved transmembrane protein.
  
     0.652
Mvan_1507
KEGG: mmc:Mmcs_1163 hypothetical protein.
  
     0.638
Mvan_0288
KEGG: mmc:Mmcs_0255 hypothetical protein.
  
     0.635
Mvan_1277
KEGG: mmc:Mmcs_0982 hypothetical protein.
 
  
 0.635
Mvan_2340
PFAM: MaoC domain protein dehydratase; KEGG: nfa:nfa20930 hypothetical protein.
 
   
 0.622
Mvan_2837
KEGG: mmc:Mmcs_3029 hypothetical protein.
  
     0.622
Mvan_3843
KEGG: mmc:Mmcs_3464 FAD dependent oxidoreductase.
  
  
 0.613
Mvan_3351
PFAM: protein of unknown function DUF402; KEGG: mbo:Mb1658c hypothetical protein.
  
     0.586
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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