STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_1837KEGG: mmc:Mmcs_2997 hypothetical protein. (263 aa)    
Predicted Functional Partners:
Mvan_5177
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mmc:Mmcs_4592 hypothetical protein.
  
     0.500
Mvan_1088
Type IV secretory pathway VirB4 components-like protein; KEGG: fal:FRAAL2645 hypothetical protein; putative IMP dehydrogenase / GMP reductase domain.
  
     0.454
Mvan_1092
KEGG: son:SO1461 protein kinase, putative.
  
     0.439
Mvan_0601
PFAM: protein of unknown function DUF1503; KEGG: mmc:Mmcs_0434 protein of unknown function DUF1503.
  
     0.403
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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