STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_1920KEGG: nfa:nfa25540 putative short chain dehydrogenase. (500 aa)    
Predicted Functional Partners:
Mvan_4125
Fatty acid synthase, bacterial type; PFAM: beta-ketoacyl synthase; acyl transferase domain protein; MaoC domain protein dehydratase; 2-nitropropane dioxygenase, NPD; domain of unknown function DUF1729; KEGG: mmc:Mmcs_3648 MaoC-like dehydratase.
  
 0.661
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
 
 
    0.600
Mvan_1919
Putative transcriptional regulator, MerR family; PFAM: regulatory protein, MerR; TipAS antibiotic-recognition domain protein; KEGG: sma:SAV4657 MerR-family transcriptional regulator.
     
 0.575
Mvan_3201
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.483
Mvan_5493
PFAM: Catalase domain protein; KEGG: csa:Csal_0803 catalase.
  
 0.483
Mvan_1369
PFAM: cyclic nucleotide-binding; ATP-binding region, ATPase domain protein domain protein; KEGG: mmc:Mmcs_1069 cyclic nucleotide-binding protein.
  
 0.480
Mvan_1370
PFAM: cyclic nucleotide-binding; ATP-binding region, ATPase domain protein domain protein; KEGG: nfa:nfa52860 putative two-component system sensor kinase.
  
 0.480
Mvan_4993
PFAM: carboxyl transferase; KEGG: mmc:Mmcs_4432 carboxyl transferase.
 
  
 0.480
Mvan_2860
KEGG: mmc:Mmcs_0284 hypothetical protein.
  
  0.476
Mvan_0915
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: mxa:MXAN_6987 fatty oxidation complex, alpha subunit.
  
 0.467
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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