close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_1963PFAM: UspA domain protein; KEGG: mmc:Mmcs_0719 UspA. (294 aa)    
Predicted Functional Partners:
Mvan_1384
KEGG: mmc:Mmcs_1074 hypothetical protein.
 
  
 0.487
Mvan_1961
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; KEGG: mpa:MAP3548c hypothetical protein.
  
    0.484
Mvan_1962
KEGG: mpa:MAP3547c hypothetical protein.
       0.473
Mvan_2550
KEGG: mtc:MT2091 hypothetical protein.
 
  
 0.445
Mvan_1387
PFAM: UspA domain protein; KEGG: mmc:Mmcs_1087 UspA.
 
   
0.433
Mvan_1414
KEGG: mbo:Mb1767 hypothetical protein.
  
  
 0.429
Mvan_1381
PFAM: UspA domain protein; KEGG: mbo:Mb2657c hypothetical protein.
 
     0.424
Mvan_1960
KEGG: mpa:MAP3549 hypothetical protein.
  
  
 0.421
Mvan_1377
KEGG: mmc:Mmcs_1095 hypothetical protein.
  
  
 0.401
hpf
SSU ribosomal protein S30P / sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
  
 0.401
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.