STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_1995PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_1775 AMP-dependent synthetase and ligase. (541 aa)    
Predicted Functional Partners:
Mvan_5258
PFAM: cytochrome P450; KEGG: mmc:Mmcs_4677 cytochrome P450.
 
 0.944
Mvan_3012
PFAM: cytochrome P450; KEGG: mpa:MAP1614c putative cytochrome P450.
  
 0.936
Mvan_5151
PFAM: cytochrome P450; KEGG: mmc:Mmcs_4572 cytochrome P450.
  
 0.936
Mvan_5217
PFAM: cytochrome P450; KEGG: mmc:Mmcs_4631 cytochrome P450.
  
 0.936
Mvan_5206
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mmc:Mmcs_4622 acyl-CoA dehydrogenase-like protein.
 
 
 0.929
Mvan_5207
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mmc:Mmcs_4623 acyl-CoA dehydrogenase-like protein.
 
 
 0.923
Mvan_5215
PFAM: AMP-dependent synthetase and ligase; KEGG: mpa:MAP0550 Acyl-CoA synthetase.
  
  
 
0.918
Mvan_2010
PFAM: AMP-dependent synthetase and ligase; KEGG: mpa:MAP2380 FadD19_2.
  
  
 
0.911
Mvan_1997
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mpa:MAP2386c hypothetical protein.
 
  
 0.907
Mvan_4578
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mmc:Mmcs_4069 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
    
 0.905
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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