STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_2002KEGG: mtc:MT2028 hypothetical protein. (124 aa)    
Predicted Functional Partners:
Mvan_0638
PFAM: Aldose 1-epimerase; KEGG: mmc:Mmcs_0469 aldose 1-epimerase.
  
     0.619
Mvan_2003
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mmc:Mmcs_2009 formate dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.562
Mvan_3377
KEGG: mmc:Mmcs_3027 hypothetical protein.
  
     0.447
Mvan_2227
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_2010 transcriptional regulator, TetR family.
  
     0.430
Mvan_3207
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mpa:MAP3234c hypothetical protein.
  
     0.418
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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