STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_2015PFAM: regulatory protein, TetR; KEGG: sma:SAV431 TetR-family transcriptional regulator. (203 aa)    
Predicted Functional Partners:
Mvan_2016
PFAM: aminoglycoside phosphotransferase; SMART: protein of unknown function DUF227; KEGG: mmc:Mmcs_2486 aminoglycoside phosphotransferase.
 
     0.703
Mvan_0100
KEGG: mmc:Mmcs_0085 membrane protein-like protein.
 
    0.640
Mvan_1175
PFAM: alpha/beta hydrolase fold; KEGG: mmc:Mmcs_3728 alpha/beta hydrolase fold.
 
     0.578
Mvan_2018
PFAM: luciferase family protein; KEGG: mmc:Mmcs_1793 luciferase-like protein.
     
 0.572
Mvan_2017
KEGG: mmc:Mmcs_1792 protein of unknown function DUF1486.
       0.570
Mvan_2332
KEGG: afm:Afu6g14570 hypothetical protein.
  
     0.481
Mvan_1256
KEGG: mxa:MXAN_2257 FHA domain protein.
 
     0.458
Mvan_1292
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmc:Mmcs_0996 glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.431
Mvan_5721
Hypothetical protein.
  
     0.431
Mvan_5177
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mmc:Mmcs_4592 hypothetical protein.
  
     0.418
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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