Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Mvan_2197PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mmc:Mmcs_1977 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (402 aa)    
Predicted Functional Partners:
Mvan_0531
KEGG: mmc:Mmcs_1672 hypothetical protein.
  
 
 0.932
Mvan_2198
PFAM: acyl-CoA thioesterase; KEGG: mmc:Mmcs_1978 acyl-CoA thioesterase.
    
  0.869
Mvan_0223
KEGG: mmc:Mmcs_0184 hypothetical protein; Belongs to the CoA-transferase III family.
  
     0.762
Mvan_2196
TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mmc:Mmcs_1975 HAD-superfamily hydrolase, subfamily IIA; Belongs to the HAD-like hydrolase superfamily.
       0.705
Mvan_1977
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mmc:Mmcs_1759 acyl-CoA dehydrogenase-like protein.
  
 
 0.627
Mvan_1974
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mmc:Mmcs_1756 acyl-CoA dehydrogenase-like protein.
  
 
 0.623
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
       0.601
Mvan_2195
KEGG: mmc:Mmcs_1973 hypothetical protein.
       0.598
Mvan_2193
Signal peptidase I, Serine peptidase, MEROPS family S26A; KEGG: mmc:Mmcs_1971 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S26 family.
       0.564
Mvan_1978
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mmc:Mmcs_1760 transcriptional regulator, GntR family.
 
   
 0.550
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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