STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_2469KEGG: mmc:Mmcs_2193 hypothetical protein. (241 aa)    
Predicted Functional Partners:
Mvan_3923
KEGG: mmc:Mmcs_3527 hypothetical protein.
 
  
 0.779
Mvan_1507
KEGG: mmc:Mmcs_1163 hypothetical protein.
  
     0.765
Mvan_2471
KEGG: mmc:Mmcs_2195 hypothetical protein.
 
     0.745
Mvan_3548
KEGG: mmc:Mmcs_3281 hypothetical protein.
  
     0.730
Mvan_2692
PFAM: protein of unknown function DUF1396; KEGG: mmc:Mmcs_2388 protein of unknown function DUF1396.
  
     0.686
Mvan_2097
(1->4)-alpha-D-glucan branching enzyme; PFAM: glycoside hydrolase, family 57; KEGG: mmc:Mmcs_1868 glycoside hydrolase, family 57; Belongs to the glycosyl hydrolase 57 family.
  
     0.681
Mvan_2470
PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: mmc:Mmcs_2194 nucleic acid binding, OB-fold, tRNA/helicase-type.
       0.653
Mvan_4666
KEGG: mmc:Mmcs_4141 hypothetical protein.
  
     0.637
Mvan_3439
KEGG: mmc:Mmcs_2477 hypothetical protein.
  
     0.625
Mvan_4299
LpqM; KEGG: mmc:Mmcs_3856 LpqM.
 
   
 0.619
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.