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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_3096KEGG: mmc:Mmcs_2816 hypothetical protein. (298 aa)    
Predicted Functional Partners:
Mvan_3094
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: mmc:Mmcs_2814 protein of unknown function DUF21.
       0.866
Mvan_3095
PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: mmc:Mmcs_2815 protein of unknown function DUF21.
       0.866
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
       0.721
Mvan_3098
PFAM: von Willebrand factor, type A; KEGG: mmc:Mmcs_2818 hypothetical protein.
       0.479
Mvan_3808
PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: mmc:Mmcs_3435 acyl-CoA dehydrogenase-like protein.
  
     0.419
Mvan_2263
PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: mmc:Mmcs_2045 GCN5-related N-acetyltransferase.
  
     0.403
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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