Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_3239KEGG: mmc:Mmcs_1470 hypothetical protein. (114 aa)    
Predicted Functional Partners:
Mvan_3683
KEGG: mmc:Mmcs_1433 hypothetical protein.
 
 
 
 0.559
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.558
Mvan_4471
LprE; KEGG: mmc:Mmcs_3968 LprE.
    
 0.535
Mvan_2010
PFAM: AMP-dependent synthetase and ligase; KEGG: mpa:MAP2380 FadD19_2.
  
 
  0.523
Mvan_0218
PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_0177 AMP-dependent synthetase and ligase.
  
 
  0.515
Mvan_3238
PFAM: regulatory protein, ArsR; KEGG: dra:DRA0071 transcriptional repressor SmtB.
       0.500
Mvan_5386
TIGRFAM: amino acid adenylation domain; non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase; transferase hexapeptide repeat containing protein; phosphopantetheine-binding; KEGG: mmc:Mmcs_4786 non-ribosomal peptide synthetase-like protein.
  
 0.500
Mvan_0999
PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: hch:HCH_02966 polyketide synthase modules and related protein.
  
 0.494
Mvan_2675
PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; KEGG: fra:Francci3_1178 AMP-dependent synthetase and ligase.
   
 0.489
Mvan_0012
PFAM: cytochrome P450; KEGG: mmc:Mmcs_4652 cytochrome P450.
  
  0.484
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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