STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
xerDTyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (317 aa)    
Predicted Functional Partners:
Mvan_3282
PFAM: NUDIX hydrolase; KEGG: mmc:Mmcs_2943 NUDIX hydrolase.
  
  
 0.982
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
  
  
 0.945
Mvan_3285
KEGG: mmc:Mmcs_2946 hypothetical protein.
 
    0.770
Mvan_3284
KEGG: mmc:Mmcs_2945 hypothetical protein.
  
    0.739
Mvan_2393
PFAM: cell divisionFtsK/SpoIIIE; KEGG: mmc:Mmcs_2121 cell division FtsK/SpoIIIE.
 
   
 0.658
rpmE2
PFAM: ribosomal protein L31; KEGG: mpa:MAP3771 putative 50S ribosomal protein L31.
  
 
 
 0.505
Mvan_6071
Chromosome segregation DNA-binding protein; TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: mmc:Mmcs_5406 ParB-like partition proteins; Belongs to the ParB family.
 
  
 0.490
rplY
LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
 
   0.458
Mvan_6072
Chromosome segregation ATPase; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: mmc:Mmcs_5407 cobyrinic acid a,c-diamide synthase.
 
   
 0.422
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
  
 0.421
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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