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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_3501KEGG: mmc:Mmcs_3236 integral membrane protein. (166 aa)    
Predicted Functional Partners:
Mvan_3500
PFAM: protein of unknown function DUF112, transmembrane; KEGG: mmc:Mmcs_3235 protein of unknown function DUF112, transmembrane.
 
  
 0.993
Mvan_3502
PFAM: Uncharacterized protein UPF0065; KEGG: rha:RHA1_ro06623 hypothetical protein.
 
  
 0.993
Mvan_3499
PFAM: UspA domain protein; KEGG: mmc:Mmcs_3234 UspA.
 
     0.906
Mvan_3503
PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold domain protein; KEGG: mmc:Mmcs_3238 signal transduction histidine kinase regulating citrate/malate metabolism.
 
   
 0.874
Mvan_3504
PFAM: response regulator receiver; KEGG: mmc:Mmcs_3239 response regulator receiver and unknown domain protein.
 
     0.823
Mvan_4697
PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: mmc:Mmcs_4177 signal transduction histidine kinase regulating citrate/malate metabolism.
 
     0.469
Mvan_1609
PFAM: putative ammonia monooxygenase; KEGG: mmc:Mmcs_1243 putative ammonia monooxygenase.
  
    0.407
Mvan_3161
PFAM: putative ammonia monooxygenase; KEGG: mmc:Mmcs_1243 putative ammonia monooxygenase.
  
    0.407
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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