Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_3554KEGG: mmc:Mmcs_3288 hypothetical protein. (114 aa)    
Predicted Functional Partners:
Mvan_3553
PFAM: transposase, IS4 family protein; KEGG: mmc:Mmcs_5428 TnpC protein.
       0.752
Mvan_1576
KEGG: mpa:MAP3445 hypothetical protein.
  
     0.647
Mvan_2442
PFAM: Peptidoglycan-binding LysM; KEGG: mmc:Mmcs_2169 peptidoglycan-binding LysM.
  
     0.631
Mvan_5083
KEGG: mmc:Mmcs_4509 hypothetical protein.
  
     0.568
Mvan_3322
KEGG: mmc:Mmcs_2976 hypothetical protein.
  
     0.530
Mvan_5660
KEGG: mmc:Mmcs_5030 hypothetical protein.
  
     0.513
Mvan_3552
PFAM: NLP/P60 protein; KEGG: mmc:Mmcs_3287 NLP/P60.
 
     0.511
Mvan_4770
PFAM: Septum formation initiator; KEGG: mmc:Mmcs_4239 septum formation initiator.
  
     0.499
Mvan_2399
KEGG: mmc:Mmcs_2127 putative conserved membrane alanine rich protein.
  
     0.480
Mvan_3452
KEGG: mtc:MT2173 hypothetical protein.
  
     0.474
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.