STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_3589PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: sha:SH1662 hypothetical protein. (349 aa)    
Predicted Functional Partners:
Mvan_3588
PFAM: phage integrase family protein; KEGG: ser:SERP2507 transposase B.
 
    
0.844
Mvan_5938
PFAM: phage integrase family protein; KEGG: mlo:mll6043 integrase/recombinase.
 
   
 0.728
Mvan_0474
PFAM: phage integrase family protein; KEGG: nfa:pnf2830 putative recombinase.
 
   
 0.653
Mvan_5943
PFAM: phage integrase family protein; KEGG: nfa:pnf2830 putative recombinase.
 
   
 0.653
Mvan_2393
PFAM: cell divisionFtsK/SpoIIIE; KEGG: mmc:Mmcs_2121 cell division FtsK/SpoIIIE.
 
   
 0.632
Mvan_3590
Transposase, mutator type; Required for the transposition of the insertion element.
     
 0.594
Mvan_1760
KEGG: mpa:MAP3356c hypothetical protein.
  
    0.579
ruvB
Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
 
  
 0.556
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
  
 0.555
rpmE2
PFAM: ribosomal protein L31; KEGG: mpa:MAP3771 putative 50S ribosomal protein L31.
  
 
 
 0.544
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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