STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_4264KEGG: mmc:Mmcs_3829 hypothetical protein. (100 aa)    
Predicted Functional Partners:
Mvan_4263
PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_3828 AMP-dependent synthetase and ligase.
 
     0.884
Mvan_0224
PFAM: Amidohydrolase 3; KEGG: mmc:Mmcs_0185 amidohydrolase 3.
 
     0.779
Mvan_2602
PFAM: amidohydrolase 2; KEGG: mmc:Mmcs_2299 amidohydrolase 2.
 
     0.750
Mvan_4275
PFAM: amidohydrolase 2; KEGG: mmc:Mmcs_2699 amidohydrolase 2.
 
     0.750
Mvan_2022
PFAM: amidohydrolase 2; KEGG: mpa:MAP0722 hypothetical protein.
 
     0.749
Mvan_4134
PFAM: amidohydrolase 2; KEGG: mmc:Mmcs_3656 amidohydrolase 2.
 
     0.749
Mvan_4211
PFAM: amidohydrolase 2; KEGG: mpa:MAP0722 hypothetical protein.
 
     0.748
Mvan_1994
PFAM: amidohydrolase 2; KEGG: mmc:Mmcs_1774 amidohydrolase 2.
 
     0.745
Mvan_2231
KEGG: mpa:MAP3547c hypothetical protein.
  
     0.743
Mvan_0383
PFAM: amidohydrolase 2; KEGG: mmc:Mmcs_2299 amidohydrolase 2.
 
     0.725
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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