STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_4497PFAM: O-methyltransferase, family 3; Methyltransferase type 11; KEGG: mmc:Mmcs_3995 O-methyltransferase, family 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-dependent O-methyltransferase family. (252 aa)    
Predicted Functional Partners:
Mvan_3280
PFAM: O-methyltransferase, family 3; KEGG: mtc:MT1743 catechol-O-methyltransferase.
  
     0.663
Mvan_4496
RNA polymerase, sigma 29 subunit, SigE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mmc:Mmcs_3994 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
       0.659
Mvan_4498
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_3996 transcriptional regulator, TetR family.
     
 0.655
Mvan_4500
KEGG: mmc:Mmcs_3998 putative ABC transporter membrane-spanning protein.
     
 0.604
Mvan_1562
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: mmc:Mmcs_1216 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 0.582
Mvan_4499
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_3997 ABC transporter related.
  
  
 0.567
Mvan_4501
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: mmc:Mmcs_3999 isoprenylcysteine carboxyl methyltransferase.
     
 0.548
tatB
Twin-arginine translocation protein, TatB subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
     
 0.495
Mvan_4495
KEGG: mmc:Mmcs_3993 hypothetical protein.
       0.470
Mvan_3835
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
 
    0.443
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.