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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_4550KEGG: mmc:Mmcs_4045 hypothetical protein. (406 aa)    
Predicted Functional Partners:
Mvan_3550
PFAM: glycosyl transferase, group 1; KEGG: mmc:Mmcs_3285 glycosyl transferase, group 1.
  
  
 0.820
Mvan_0978
PFAM: glycosyl transferase, group 1; KEGG: mmc:Mmcs_0761 glycosyl transferase, group 1.
  
  
 0.807
Mvan_5366
KEGG: mmc:Mmcs_4764 hypothetical protein.
  
    0.767
Mvan_4858
KEGG: mmc:Mmcs_4321 hypothetical protein.
  
     0.751
Mvan_6035
KEGG: mmc:Mmcs_5371 hypothetical protein.
  
   
 0.745
Mvan_4551
KEGG: mmc:Mmcs_4046 hypothetical protein.
  
    0.729
Mvan_0671
KEGG: mmc:Mmcs_0504 hypothetical protein.
  
     0.708
Mvan_0253
KEGG: mmc:Mmcs_0226 putative conserved transmembrane protein.
 
  
 0.701
Mvan_5098
KEGG: mmc:Mmcs_4526 hypothetical protein.
  
   
 0.699
Mvan_4552
KEGG: mmc:Mmcs_4047 hypothetical protein.
 
     0.666
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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