STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_4580TIGRFAM: H+ Antiporter protein; PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO6805 integral membrane efflux protein. (443 aa)    
Predicted Functional Partners:
Mvan_6041
KEGG: mmc:Mmcs_2701 hypothetical protein.
   
  
 0.598
Mvan_4579
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mmc:Mmcs_4070 enoyl-CoA hydratase/isomerase.
       0.587
Mvan_4514
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_4011 ABC transporter related.
     
 0.536
Mvan_4581
PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sth:STH305 transposase.
       0.497
Mvan_4578
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mmc:Mmcs_4069 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
    0.436
Mvan_0236
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: mmc:Mmcs_0214 transcriptional regulator, AraC family.
 
  
 0.413
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.