STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_4591KEGG: mmc:Mmcs_4082 hypothetical protein. (574 aa)    
Predicted Functional Partners:
Mvan_1820
KEGG: mpa:MAP3225 hypothetical protein.
  
     0.654
Mvan_1868
KEGG: mpa:MAP3225 hypothetical protein.
  
     0.639
Mvan_5077
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_4506 transcriptional regulator, TetR family.
  
     0.607
Mvan_4592
PFAM: DoxX family protein; KEGG: mmc:Mmcs_4083 DoxX.
       0.560
Mvan_5153
KEGG: mmc:Mmcs_4574 hypothetical protein.
  
     0.538
Mvan_0919
KEGG: mmc:Mmcs_1530 hypothetical protein.
  
     0.522
Mvan_4593
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO0511 dehydrogenase (secreted protein).
       0.520
Mvan_1869
PFAM: aminoglycoside phosphotransferase; KEGG: mpa:MAP3224 hypothetical protein.
  
     0.490
Mvan_0405
KEGG: mpa:MAP3717c hypothetical protein.
  
     0.489
Mvan_1343
TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: mmc:Mmcs_1042 signal peptide peptidase SppA, 67K type.
      
 0.480
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.