STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_46353-beta hydroxysteroid dehydrogenase/isomerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KR; KEGG: mmc:Mmcs_4109 3-beta hydroxysteroid dehydrogenase/isomerase. (375 aa)    
Predicted Functional Partners:
Mvan_1514
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: mbo:Mb3443c probable cholesterol oxidase precursor ChoD (cholesterol-O2 oxidoreductase).
  
 
 0.940
Mvan_5217
PFAM: cytochrome P450; KEGG: mmc:Mmcs_4631 cytochrome P450.
  
 0.928
Mvan_3012
PFAM: cytochrome P450; KEGG: mpa:MAP1614c putative cytochrome P450.
  
 0.922
Mvan_5258
PFAM: cytochrome P450; KEGG: mmc:Mmcs_4677 cytochrome P450.
  
 0.922
Mvan_5151
PFAM: cytochrome P450; KEGG: mmc:Mmcs_4572 cytochrome P450.
  
 0.920
rpsS
SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.702
Mvan_1080
PFAM: AMP-dependent synthetase and ligase; KEGG: xac:XAC0237 peptide synthase.
 
 
 0.698
rpsC
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 0.686
rpsQ
SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 0.679
rpsL
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.
  
 0.667
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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