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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_4657KEGG: mmc:Mmcs_4132 hypothetical protein. (398 aa)    
Predicted Functional Partners:
coaA
KEGG: mmc:Mmcs_4133 pantothenate kinase; TIGRFAM: pantothenate kinase; PFAM: phosphoribulokinase/uridine kinase.
       0.722
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
       0.645
Mvan_4632
KEGG: mmc:Mmcs_4106 hypothetical protein.
  
     0.608
Mvan_4495
KEGG: mmc:Mmcs_3993 hypothetical protein.
  
     0.596
Mvan_0018
KEGG: mmc:Mmcs_0011 hypothetical protein.
  
     0.584
Mvan_0102
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_0086 transcriptional regulator, TetR family.
  
     0.537
Mvan_5366
KEGG: mmc:Mmcs_4764 hypothetical protein.
 
     0.512
Mvan_5663
KEGG: mmc:Mmcs_5035 hypothetical protein.
  
     0.506
Mvan_0977
KEGG: mmc:Mmcs_0755 hypothetical protein.
 
     0.480
Mvan_4666
KEGG: mmc:Mmcs_4141 hypothetical protein.
  
     0.473
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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