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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_4792PFAM: regulatory protein, TetR; KEGG: ava:Ava_4037 transcriptional regulator, TetR family. (184 aa)    
Predicted Functional Partners:
Mvan_5628
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa1960 putative short chain dehydrogenase.
     
 0.456
Mvan_1213
PFAM: nitroreductase; KEGG: ret:RHE_PF00227 probable nitroreductase protein.
     
 0.428
Mvan_4791
PFAM: OsmC family protein; KEGG: gsu:GSU2788 hypothetical protein.
  
    0.425
Mvan_1032
PFAM: helix-turn-helix, HxlR type; KEGG: sma:SAV520 transcriptional regulator.
  
  
 0.408
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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