close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_4820KEGG: bur:Bcep18194_B1171 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Mvan_4821
PFAM: Carboxymuconolactone decarboxylase; KEGG: mpa:MAP0745c putative 4-carboxymuconolactone decarboxylase.
 
   
 0.806
Mvan_4240
KEGG: mmc:Mmcs_3781 hypothetical protein.
 
    0.729
Mvan_4819
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mmc:Mmcs_4442 diguanylate cyclase.
       0.705
Mvan_4822
3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: mpa:MAP0744c probable oxidoreductase.
       0.688
Mvan_4947
PFAM: protein of unknown function DUF849; KEGG: mmc:Mmcs_4383 protein of unknown function DUF849.
  
    0.681
Mvan_1203
KEGG: nfa:nfa21060 hypothetical protein.
  
     0.629
Mvan_3057
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mmc:Mmcs_2769 tetratricopeptide TPR_2.
 
     0.615
Mvan_4739
Hypothetical protein; KEGG: sma:SAV967 glycosyl hydrolase.
  
     0.588
Mvan_4823
PFAM: regulatory protein, MarR; KEGG: mmc:Mmcs_2578 transcriptional regulator, MarR family.
  
    0.574
Mvan_0371
Cutinase; Catalyzes the hydrolysis of cutin, a polyester that forms the structure of plant cuticle.
  
     0.561
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.