STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_4875PFAM: acyltransferase 3; KEGG: mmc:Mmcs_4332 acyltransferase 3. (671 aa)    
Predicted Functional Partners:
Mvan_4472
KEGG: mmc:Mmcs_3969 nuclease (RecB family)-like protein.
  
    0.605
Mvan_0103
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_0087 transcriptional regulator, TetR family.
  
     0.585
Mvan_5753
PFAM: Rhomboid family protein; KEGG: mmc:Mmcs_5148 rhomboid-like protein.
     
 0.584
Mvan_0408
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mbo:Mb0280 hypothetical protein.
     
 0.507
Mvan_2373
PFAM: HNH endonuclease; protein of unknown function DUF222; SMART: HNH nuclease; KEGG: mmc:Mmcs_2471 protein of unknown function DUF222.
 
     0.479
Mvan_4558
PFAM: HNH endonuclease; protein of unknown function DUF222; SMART: HNH nuclease; KEGG: mmc:Mmcs_2471 protein of unknown function DUF222.
 
     0.479
Mvan_4876
PFAM: aldehyde dehydrogenase; KEGG: mmc:Mmcs_4333 succinate-semialdehyde dehydrogenase (NAD(P)+); Belongs to the aldehyde dehydrogenase family.
       0.479
Mvan_4960
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_4404 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.477
Mvan_0273
PFAM: HNH endonuclease; protein of unknown function DUF222; SMART: HNH nuclease; KEGG: mmc:Mmcs_2471 protein of unknown function DUF222.
 
     0.476
Mvan_4621
PFAM: HNH endonuclease; protein of unknown function DUF222; SMART: HNH nuclease; KEGG: mmc:Mmcs_2471 protein of unknown function DUF222.
 
     0.457
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.