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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_4906PFAM: monooxygenase, FAD-binding; KEGG: sma:SAV563 putative 3-(3-hydroxy-phenyl)propionate hydroxylase. (511 aa)    
Predicted Functional Partners:
mhpB
Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; Catalyzes the non-heme iron(II)-dependent oxidative cleavage of 2,3-dihydroxyphenylpropionic acid and 2,3-dihydroxicinnamic acid into 2-hydroxy-6-ketononadienedioate and 2-hydroxy-6- ketononatrienedioate, respectively; Belongs to the LigB/MhpB extradiol dioxygenase family.
 
 
 0.938
Mvan_4412
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: plu:plu2207 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.913
Mvan_4908
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV565 2,3-dihydroxybiphenyl-1,2-dioxygenase.
 
   
 0.906
Mvan_4909
PFAM: regulatory protein, TetR; KEGG: sma:SAV566 TetR-family transcriptional regulator.
 
 
 
 0.856
Mvan_4907
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sma:SAV564 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
 
  
 0.840
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.537
Mvan_2513
KEGG: nfa:nfa2450 hypothetical protein.
  
     0.507
Mvan_2943
PFAM: fatty acid hydroxylase; KEGG: mmc:Mmcs_2728 fatty acid hydroxylase.
   
 
 0.498
Mvan_3171
KEGG: mmc:Mmcs_2864 sterol desaturase-related protein.
   
 
 0.498
Mvan_3683
KEGG: mmc:Mmcs_1433 hypothetical protein.
   
 
 0.498
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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