STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_4907PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sma:SAV564 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase. (312 aa)    
Predicted Functional Partners:
Mvan_4908
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV565 2,3-dihydroxybiphenyl-1,2-dioxygenase.
 
  
 0.968
Mvan_4909
PFAM: regulatory protein, TetR; KEGG: sma:SAV566 TetR-family transcriptional regulator.
 
     0.896
Mvan_4906
PFAM: monooxygenase, FAD-binding; KEGG: sma:SAV563 putative 3-(3-hydroxy-phenyl)propionate hydroxylase.
 
  
 0.840
Mvan_1897
PFAM: homogentisate 1,2-dioxygenase; KEGG: mpa:MAP3191 hypothetical protein.
  
  
 0.675
Mvan_4532
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: jan:Jann_2039 fumarylacetoacetate (FAA) hydrolase.
 
     0.674
Mvan_0443
PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: aba:Acid345_0379 iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.493
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: mmc:Mmcs_2965 argininosuccinate lyase.
 
  
 0.441
Mvan_0965
KEGG: mpa:MAP1857 hypothetical protein.
 
 
 0.432
Mvan_4137
KEGG: mmc:Mmcs_3733 hypothetical protein.
  
  
 0.421
Mvan_0014
PFAM: aldehyde dehydrogenase; KEGG: mmc:Mmcs_4650 betaine-aldehyde dehydrogenase.
  
 
 0.420
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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