STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_4933KEGG: mmc:Mmcs_4377 hypothetical protein. (274 aa)    
Predicted Functional Partners:
Mvan_4932
PFAM: cytochrome c oxidase, subunit III; KEGG: mmc:Mmcs_4376 cytochrome c oxidase, subunit III.
 
     0.823
Mvan_4931
KEGG: mmc:Mmcs_4375 hypothetical protein.
       0.800
Mvan_3975
KEGG: reu:Reut_A1634 hypothetical protein.
  
     0.672
Mvan_2033
KEGG: mmc:Mmcs_3829 hypothetical protein.
  
     0.527
Mvan_4264
KEGG: mmc:Mmcs_3829 hypothetical protein.
  
     0.516
Mvan_2228
KEGG: mmc:Mmcs_2011 aminoglycoside phosphotransferase.
  
     0.479
Mvan_4934
PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV6757 4-carboxymuconolactone decarboxylase.
       0.461
Mvan_4935
PFAM: regulatory protein, MerR; KEGG: bam:Bamb_1782 transcriptional regulator, MerR family.
       0.461
Mvan_0356
PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bha:BH2178 short-chain-specific acyl-CoA dehydrogenase.
  
     0.460
Mvan_2231
KEGG: mpa:MAP3547c hypothetical protein.
  
     0.459
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.