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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_4970PFAM: dihydrodipicolinate reductase; KEGG: mmc:Mmcs_4413 hypothetical protein. (357 aa)    
Predicted Functional Partners:
Mvan_4971
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_4414 short-chain dehydrogenase/reductase SDR.
 
    0.809
Mvan_2186
KEGG: mpa:MAP1750 hypothetical protein.
  
     0.670
Mvan_0432
KEGG: mmc:Mmcs_0398 hypothetical protein.
  
     0.662
Mvan_5849
FdxD; KEGG: mmc:Mmcs_5292 FdxD.
  
     0.618
Mvan_5165
PFAM: nuclear transport factor 2; KEGG: mmc:Mmcs_4586 nuclear transport factor 2.
  
     0.603
Mvan_2231
KEGG: mpa:MAP3547c hypothetical protein.
  
     0.600
Mvan_4969
KEGG: xac:XAC2195 hypothetical protein.
       0.566
Mvan_2269
KEGG: mpa:MAP4305 hypothetical protein.
  
     0.545
Mvan_1962
KEGG: mpa:MAP3547c hypothetical protein.
  
     0.542
Mvan_1940
Hypothetical protein; KEGG: aor:AO090102000296 predicted protein.
 
     0.520
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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