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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_5000KEGG: sco:SCO7104 RNA polymerase sigma factor. (249 aa)    
Predicted Functional Partners:
Mvan_4999
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO7112 putative ECF-family RNA polymerase sigma factor.
 
     0.895
Mvan_5347
RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mmc:Mmcs_4269 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family.
  
     0.666
Mvan_4806
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mmc:Mmcs_4271 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family.
  
     0.664
Mvan_5001
NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: sco:SCO7108 hypothetical protein.
 
     0.651
Mvan_1575
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mmc:Mmcs_1223 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family.
  
     0.603
Mvan_4710
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: nfa:nfa26100 putative sigma factor.
  
   
 0.539
Mvan_0781
Putative transmembrane anti-sigma factor.
 
 
 0.514
Mvan_1502
KEGG: nfa:nfa9170 hypothetical protein.
 
 
 0.513
Mvan_5829
Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: nfa:nfa23690 putative transcriptional regulator.
  
  
 0.498
Mvan_5828
Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: sco:SCO0466 AraC family transcriptional regulator.
  
  
 0.496
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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