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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_5002PFAM: regulatory protein, LuxR; KEGG: mmc:Mmcs_4923 transcriptional regulator, LuxR family. (940 aa)    
Predicted Functional Partners:
Mvan_3041
PFAM: Carboxymuconolactone decarboxylase; KEGG: mmc:Mmcs_2755 carboxymuconolactone decarboxylase.
 
     0.642
Mvan_5001
NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: sco:SCO7108 hypothetical protein.
 
     0.624
Mvan_0711
KEGG: mpa:MAP3901 hypothetical protein.
  
     0.580
Mvan_3166
KEGG: mmc:Mmcs_2857 hypothetical protein.
  
     0.530
Mvan_5003
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mmc:Mmcs_4922 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.497
Mvan_5000
KEGG: sco:SCO7104 RNA polymerase sigma factor.
 
   
 0.492
Mvan_4101
PFAM: protein of unknown function DUF1486; KEGG: bja:bll3988 hypothetical protein.
 
     0.480
Mvan_4852
PFAM: protein of unknown function DUF1707; KEGG: mmc:Mmcs_4310 protein of unknown function DUF1707.
  
     0.456
Mvan_4594
PFAM: regulatory protein, TetR; KEGG: fal:FRAAL4715 putative transcriptional regulator of the TetR family.
  
     0.454
Mvan_1854
PFAM: purine catabolism PurC domain protein; KEGG: tfu:Tfu_1795 helix-turn-helix, fis-type.
  
     0.441
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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