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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_5083KEGG: mmc:Mmcs_4509 hypothetical protein. (339 aa)    
Predicted Functional Partners:
Mvan_5084
KEGG: mmc:Mmcs_4510 transcriptional regulator, TetR family.
 
     0.909
Mvan_2442
PFAM: Peptidoglycan-binding LysM; KEGG: mmc:Mmcs_2169 peptidoglycan-binding LysM.
  
     0.663
Mvan_5085
PFAM: fatty acid desaturase, type 2; KEGG: mmc:Mmcs_4511 fatty acid desaturase, type 2.
       0.615
Mvan_5086
Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.601
Mvan_4987
KEGG: mmc:Mmcs_4426 hypothetical protein.
  
     0.596
Mvan_5082
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mmc:Mmcs_5395 serine/threonine protein kinase.
       0.581
Mvan_3554
KEGG: mmc:Mmcs_3288 hypothetical protein.
  
     0.568
Mvan_0440
Hypothetical protein.
  
     0.553
Mvan_0409
FadD27; KEGG: mpa:MAP3723c FadD27.
 
     0.530
Mvan_3168
KEGG: mmc:Mmcs_2859 hypothetical protein.
  
     0.523
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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