Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Clos_0097 | Clos_0357 | Clos_0097 | Clos_0357 | KEGG: dsy:DSY1108 hypothetical protein. | KEGG: cdf:CD1728 hypothetical protein. | 0.614 |
Clos_0172 | Clos_0357 | Clos_0172 | Clos_0357 | KEGG: cbo:CBO0408 hypothetical protein. | KEGG: cdf:CD1728 hypothetical protein. | 0.426 |
Clos_0355 | Clos_0356 | Clos_0355 | Clos_0356 | PFAM: beta-lactamase domain protein; KEGG: ctc:CTC01895 metal dependent hydrolase. | KEGG: fjo:Fjoh_1869 hypothetical protein. | 0.622 |
Clos_0355 | Clos_0357 | Clos_0355 | Clos_0357 | PFAM: beta-lactamase domain protein; KEGG: ctc:CTC01895 metal dependent hydrolase. | KEGG: cdf:CD1728 hypothetical protein. | 0.536 |
Clos_0355 | Clos_0358 | Clos_0355 | Clos_0358 | PFAM: beta-lactamase domain protein; KEGG: ctc:CTC01895 metal dependent hydrolase. | PFAM: Excinuclease ABC C subunit domain protein; KEGG: dsy:DSY1229 hypothetical protein. | 0.424 |
Clos_0355 | Clos_0359 | Clos_0355 | Clos_0359 | PFAM: beta-lactamase domain protein; KEGG: ctc:CTC01895 metal dependent hydrolase. | PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cac:CAC0196 NADH-dependent flavine oxidoreductase. | 0.547 |
Clos_0356 | Clos_0355 | Clos_0356 | Clos_0355 | KEGG: fjo:Fjoh_1869 hypothetical protein. | PFAM: beta-lactamase domain protein; KEGG: ctc:CTC01895 metal dependent hydrolase. | 0.622 |
Clos_0356 | Clos_0357 | Clos_0356 | Clos_0357 | KEGG: fjo:Fjoh_1869 hypothetical protein. | KEGG: cdf:CD1728 hypothetical protein. | 0.559 |
Clos_0356 | Clos_0358 | Clos_0356 | Clos_0358 | KEGG: fjo:Fjoh_1869 hypothetical protein. | PFAM: Excinuclease ABC C subunit domain protein; KEGG: dsy:DSY1229 hypothetical protein. | 0.525 |
Clos_0356 | Clos_0359 | Clos_0356 | Clos_0359 | KEGG: fjo:Fjoh_1869 hypothetical protein. | PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cac:CAC0196 NADH-dependent flavine oxidoreductase. | 0.604 |
Clos_0357 | Clos_0097 | Clos_0357 | Clos_0097 | KEGG: cdf:CD1728 hypothetical protein. | KEGG: dsy:DSY1108 hypothetical protein. | 0.614 |
Clos_0357 | Clos_0172 | Clos_0357 | Clos_0172 | KEGG: cdf:CD1728 hypothetical protein. | KEGG: cbo:CBO0408 hypothetical protein. | 0.426 |
Clos_0357 | Clos_0355 | Clos_0357 | Clos_0355 | KEGG: cdf:CD1728 hypothetical protein. | PFAM: beta-lactamase domain protein; KEGG: ctc:CTC01895 metal dependent hydrolase. | 0.536 |
Clos_0357 | Clos_0356 | Clos_0357 | Clos_0356 | KEGG: cdf:CD1728 hypothetical protein. | KEGG: fjo:Fjoh_1869 hypothetical protein. | 0.559 |
Clos_0357 | Clos_0358 | Clos_0357 | Clos_0358 | KEGG: cdf:CD1728 hypothetical protein. | PFAM: Excinuclease ABC C subunit domain protein; KEGG: dsy:DSY1229 hypothetical protein. | 0.697 |
Clos_0357 | Clos_0359 | Clos_0357 | Clos_0359 | KEGG: cdf:CD1728 hypothetical protein. | PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cac:CAC0196 NADH-dependent flavine oxidoreductase. | 0.623 |
Clos_0357 | def-3 | Clos_0357 | Clos_2348 | KEGG: cdf:CD1728 hypothetical protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.420 |
Clos_0358 | Clos_0355 | Clos_0358 | Clos_0355 | PFAM: Excinuclease ABC C subunit domain protein; KEGG: dsy:DSY1229 hypothetical protein. | PFAM: beta-lactamase domain protein; KEGG: ctc:CTC01895 metal dependent hydrolase. | 0.424 |
Clos_0358 | Clos_0356 | Clos_0358 | Clos_0356 | PFAM: Excinuclease ABC C subunit domain protein; KEGG: dsy:DSY1229 hypothetical protein. | KEGG: fjo:Fjoh_1869 hypothetical protein. | 0.525 |
Clos_0358 | Clos_0357 | Clos_0358 | Clos_0357 | PFAM: Excinuclease ABC C subunit domain protein; KEGG: dsy:DSY1229 hypothetical protein. | KEGG: cdf:CD1728 hypothetical protein. | 0.697 |
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