STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_0803Hypothetical protein; KEGG: lmo:lmo1181 similar to cobalamin adenosyl transferase. (245 aa)    
Predicted Functional Partners:
Clos_0793
TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: ssa:SSA_0513 ATP:cob(I)alamin adenosyltransferase, putative; Belongs to the Cob(I)alamin adenosyltransferase family.
    
 0.921
Clos_1352
TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: lwe:lwe1122 ATP:cob(I)alamin adenosyltransferase protein PduO, putative; Belongs to the Cob(I)alamin adenosyltransferase family.
     
 0.909
cobS
Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
     
  0.900
Clos_0804
Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
     
 0.777
Clos_0805
Hypothetical protein; KEGG: ssa:SSA_0528 conserved uncharacterized protein.
       0.773
Clos_0806
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: ssa:SSA_0529 ethanolamine utilization protein, putative.
  
  
 0.757
Clos_0807
PFAM: Ethanolamine utilisation protein EutH; KEGG: efa:EF1618 ethanolamine utilization protein EutH.
  
  
 0.681
Clos_0808
PFAM: Ethanolamine utilisation EutQ family protein; KEGG: efa:EF1617 hypothetical protein.
  
  
 0.646
Clos_0802
PFAM: microcompartments protein; KEGG: lwe:lwe1138 propanediol/ethanolamine utilization protein.
  
  
 0.580
Clos_0799
PFAM: microcompartments protein; KEGG: efa:EF1626 ethanolamine utilization protein EutL.
  
  
 0.538
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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