STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_1007Hypothetical protein. (102 aa)    
Predicted Functional Partners:
Clos_1008
KEGG: cdf:CD2126 hypothetical protein.
       0.773
Clos_1006
PFAM: peptidase M55 D-aminopeptidase; KEGG: lin:lin0201 similar to dipeptide ABC transporter.
       0.646
Clos_1574
Conserved carboxylase region; PFAM: pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: cth:Cthe_0701 conserved carboxylase region containing protein.
  
  
 0.588
Clos_1009
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bce:BC4034 nitrilase.
       0.540
Clos_1199
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cdf:CD2406 putative lipoprotein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.485
Clos_0394
acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
  
 0.476
Clos_0442
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cth:Cthe_0700 biotin/lipoyl attachment protein.
  
  
 0.476
Clos_1005
PFAM: Tellurite resistance protein TehB; Methyltransferase type 12; KEGG: cno:NT01CX_2005 hypothetical protein.
       0.471
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.415
Clos_1004
Hypothetical protein.
       0.407
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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