node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Clos_0564 | Clos_1173 | Clos_0564 | Clos_1173 | PFAM: band 7 protein; KEGG: cdf:CD3228 hypothetical protein. | ATP-dependent metalloprotease FtsH; KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; Belongs to the AAA ATPase family. | 0.870 |
Clos_0564 | clpX | Clos_0564 | Clos_2173 | PFAM: band 7 protein; KEGG: cdf:CD3228 hypothetical protein. | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.432 |
Clos_1173 | Clos_0564 | Clos_1173 | Clos_0564 | ATP-dependent metalloprotease FtsH; KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; Belongs to the AAA ATPase family. | PFAM: band 7 protein; KEGG: cdf:CD3228 hypothetical protein. | 0.870 |
Clos_1173 | clpX | Clos_1173 | Clos_2173 | ATP-dependent metalloprotease FtsH; KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; Belongs to the AAA ATPase family. | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.666 |
Clos_1173 | rplB | Clos_1173 | Clos_0495 | ATP-dependent metalloprotease FtsH; KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; Belongs to the AAA ATPase family. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.642 |
Clos_1173 | rplC | Clos_1173 | Clos_0492 | ATP-dependent metalloprotease FtsH; KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; Belongs to the AAA ATPase family. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.687 |
Clos_1173 | rplM | Clos_1173 | Clos_0527 | ATP-dependent metalloprotease FtsH; KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; Belongs to the AAA ATPase family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.671 |
Clos_1173 | rplO | Clos_1173 | Clos_0511 | ATP-dependent metalloprotease FtsH; KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; Belongs to the AAA ATPase family. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.644 |
Clos_1173 | rplQ | Clos_1173 | Clos_0522 | ATP-dependent metalloprotease FtsH; KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; Belongs to the AAA ATPase family. | PFAM: ribosomal protein L17; KEGG: cdf:CD0099 50S ribosomal protein L17. | 0.655 |
Clos_1173 | rplS | Clos_1173 | Clos_1468 | ATP-dependent metalloprotease FtsH; KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; Belongs to the AAA ATPase family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.639 |
Clos_1173 | rpmA | Clos_1173 | Clos_1751 | ATP-dependent metalloprotease FtsH; KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; Belongs to the AAA ATPase family. | PFAM: ribosomal protein L27; KEGG: bha:BH3009 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.706 |
Clos_1173 | rpsK | Clos_1173 | Clos_0519 | ATP-dependent metalloprotease FtsH; KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; Belongs to the AAA ATPase family. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.652 |
clpX | Clos_0564 | Clos_2173 | Clos_0564 | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | PFAM: band 7 protein; KEGG: cdf:CD3228 hypothetical protein. | 0.432 |
clpX | Clos_1173 | Clos_2173 | Clos_1173 | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | ATP-dependent metalloprotease FtsH; KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; Belongs to the AAA ATPase family. | 0.666 |
rplB | Clos_1173 | Clos_0495 | Clos_1173 | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | ATP-dependent metalloprotease FtsH; KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; Belongs to the AAA ATPase family. | 0.642 |
rplB | rplC | Clos_0495 | Clos_0492 | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
rplB | rplM | Clos_0495 | Clos_0527 | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.995 |
rplB | rplO | Clos_0495 | Clos_0511 | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.997 |
rplB | rplQ | Clos_0495 | Clos_0522 | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | PFAM: ribosomal protein L17; KEGG: cdf:CD0099 50S ribosomal protein L17. | 0.987 |
rplB | rplS | Clos_0495 | Clos_1468 | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.987 |