Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Clos_1242PFAM: band 7 protein; KEGG: cth:Cthe_0858 protein of unknown function DUF1432. (333 aa)    
Predicted Functional Partners:
Clos_1241
PFAM: protein of unknown function DUF107; KEGG: bld:BLi02730 YqeZ.
 
  
 0.992
Clos_1243
Hypothetical protein.
       0.710
Clos_1045
PFAM: band 7 protein; KEGG: gtn:GTNG_0296 flottilin.
   
  
 0.665
Clos_1240
KEGG: cdf:CD2446 putative tRNA binding protein.
       0.605
rpsU
PFAM: ribosomal protein S21; KEGG: cno:NT01CX_0051 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.559
Clos_1244
PFAM: protein of unknown function DUF1429; KEGG: cth:Cthe_1073 protein of unknown function DUF1429.
     
 0.553
Clos_1245
PFAM: putative stage IV sporulation YqfD; KEGG: cth:Cthe_1072 putative stage IV sporulation YqfD.
     
 0.546
Clos_1246
PFAM: PhoH family protein; KEGG: cdf:CD2441a PhoH-like protein.
       0.546
Clos_1247
Metal dependent phosphohydrolase; KEGG: tte:TTE0971 predicted membrane-associated HD superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; metal-dependent phosphohydrolase 7TM extracellular region; SMART: metal-dependent phosphohydrolase HD region.
       0.508
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.508
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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