STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_1281PFAM: protein of unknown function DUF633; KEGG: cdf:CD1456 hypothetical protein. (249 aa)    
Predicted Functional Partners:
Clos_1282
PFAM: protein of unknown function DUF34; KEGG: cdf:CD1457 hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
 0.990
Clos_1665
PFAM: protein of unknown function DUF965; KEGG: chy:CHY_0540 hypothetical protein; Belongs to the UPF0297 family.
  
     0.743
Clos_1283
PFAM: ribonuclease H; KEGG: aba:Acid345_0088 ribonuclease H.
       0.698
Clos_2065
PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: ctc:CTC00197 stage V sporulation protein B.
  
     0.638
Clos_1177
PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: pth:PTH_1396 membrane protein.
  
     0.631
Clos_2639
PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: cdf:CD3498 stage V sporulation protein B.
  
     0.631
Clos_1462
Putative helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.599
Clos_1280
Hypothetical protein.
       0.595
addA
Recombination helicase AddA; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddA nuclease domain is required for chi fragment generation; this subunit has the helicase and 3' -> 5' nuclease activities; Belongs to the helicase family. AddA subfamily.
 
     0.594
Clos_1783
PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: amt:Amet_2229 protein of unknown function UPF0029.
   
    0.574
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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