STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_1299PFAM: Radical SAM domain protein; KEGG: cbe:Cbei_3446 radical SAM domain protein. (229 aa)    
Predicted Functional Partners:
Clos_1298
PFAM: B3/4 domain protein; KEGG: cac:CA_P0113 solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta.
 
     0.845
Clos_1459
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cdf:CD1249 radical SAM-superfamily protein.
  
  
 0.533
Clos_2723
PFAM: GCN5-related N-acetyltransferase; KEGG: btk:BT9727_2346 acetyltransferase, GNAT family.
  
     0.529
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
    0.508
Clos_2319
PFAM: Protein of unknown function CGGC region; KEGG: ctc:CTC00418 hypothetical protein.
 
     0.490
Clos_0997
KEGG: bat:BAS2607 hypothetical protein.
  
     0.489
Clos_2198
TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cbo:CBO3170 activator of 2-hydroxyacyl-CoA dehydratase.
       0.463
Clos_2722
PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC1939 acetyltransferase.
  
     0.449
Clos_1300
Hypothetical protein.
       0.439
Clos_0603
KEGG: fnu:FN0532 hypothetical membrane-spanning protein.
  
     0.420
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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