STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_1739KEGG: csc:Csac_1821 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1. (207 aa)    
Predicted Functional Partners:
Clos_1636
PFAM: type II secretion system protein; KEGG: tte:TTE1264 General secretory pathway protein F.
  
  
 0.790
Clos_1638
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 predicted ATPases involved in pili biogenesis, PilB homologs.
  
  
 0.758
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
       0.720
cinA
Competence/damage-inducible protein CinA; TIGRFAM: molybdenum cofactor synthesis domain; competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cpr:CPR_0128 CinA family protein.
     
 0.659
Clos_1634
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.615
Clos_1882
PFAM: peptidase A24A prepilin type IV; KEGG: bha:BH3035 leader peptidase (prepilin peptidase) / N-methyltransferase.
   
  
 0.615
Clos_1740
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cdf:CD2498 D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein); Belongs to the peptidase S11 family.
     
 0.573
Clos_1635
KEGG: drm:Dred_1042 hypothetical protein.
  
  
 0.565
Clos_2525
KEGG: ppd:Ppro_2731 competence protein F, putative.
  
  
 0.563
Clos_0605
Hypothetical protein; KEGG: cpr:CPR_2264 prepilin peptidase-dependent.
  
  
 0.557
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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