STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_1874KEGG: cac:CAC2045 secreted protein containing domain of murein hydrolase (MltA homolog). (409 aa)    
Predicted Functional Partners:
Clos_1880
Hypothetical protein.
 
     0.778
Clos_1879
KEGG: dsy:DSY0038 hypothetical protein.
 
     0.738
Clos_1875
Hypothetical protein.
       0.674
Clos_1912
PFAM: TRAG family protein; KEGG: csc:Csac_1400 TraG family protein.
  
    0.613
Clos_1889
KEGG: cch:Cag_0519 hypothetical protein.
 
     0.531
Clos_1919
PFAM: zinc finger CHC2-family protein; KEGG: dsy:DSY4633 hypothetical protein.
  
     0.489
Clos_1873
Hypothetical protein.
       0.482
Clos_1923
PFAM: ParB domain protein nuclease; KEGG: ctc:CTC01936 chromosome partitioning parB family protein; Belongs to the ParB family.
  
     0.412
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.