STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_1908KEGG: cac:CAC1981 hypothetical protein. (420 aa)    
Predicted Functional Partners:
Clos_1907
PFAM: type II secretion system protein E; KEGG: cac:CAC1980 predicted ATPase involved in pili biogenesis.
       0.788
Clos_1905
KEGG: tte:TTE2067 hypothetical protein.
       0.773
Clos_1906
Hypothetical protein; KEGG: cac:CAC1979 predicted membrane protein.
       0.773
Clos_1909
Hypothetical protein.
       0.773
Clos_0237
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: amt:Amet_4657 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
 
 0.708
Clos_1904
Hypothetical protein.
       0.623
Clos_1902
Hypothetical protein.
       0.553
Clos_1903
Hypothetical protein.
       0.553
Clos_0534
TIGRFAM: GMP synthase, large subunit; PFAM: GMP synthase domain protein; KEGG: ctc:CTC02409 bifunctional GMP synthase/glutamine amidotransferase protein.
   
 
 0.531
Clos_2515
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ctc:CTC01712 UDP-4-dehydro-6-deoxy-2-acetamido-D-glucose 4-reductase.
  
  
 0.512
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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