STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_1950PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: mta:Moth_1287 beta-lactamase-like. (395 aa)    
Predicted Functional Partners:
Clos_2493
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC02521 NADH dehydrogenase, similar to nitrite reductase.
  
 0.862
Clos_0239
PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: amt:Amet_4653 desulfoferrodoxin, ferrous iron-binding region.
  
  
 0.567
Clos_2168
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pvi:Cvib_1621 rubredoxin-type Fe(Cys)4 protein.
 
  
 0.561
Clos_1363
PFAM: NADPH-dependent FMN reductase; KEGG: det:DET1371 NADPH-dependent FMN reductase.
 
    0.494
Clos_1951
TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: cno:NT01CX_0192 uracil-xanthine permease.
       0.463
Clos_0406
TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: gsu:GSU2929 hypothetical protein.
  
  
 0.462
Clos_1213
TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dsy:DSY1174 hypothetical protein.
  
  
 0.462
Clos_2805
TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cbo:CBO0518 oxygen binding protein.
  
  
 0.462
Clos_2806
PFAM: Rubrerythrin; KEGG: ctc:CTC02638 rubrerythrin.
 
  
 0.451
Clos_1949
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; extracellular solute-binding protein family 3; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
       0.450
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.