STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_1963KEGG: mta:Moth_1442 hypothetical protein. (370 aa)    
Predicted Functional Partners:
Clos_1962
PFAM: SirA family protein; KEGG: pth:PTH_0551 predicted redox protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.980
Clos_1961
KEGG: cdf:CD3666 hypothetical protein.
 
     0.835
Clos_0022
PFAM: SirA family protein; KEGG: amt:Amet_0027 SirA family protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.760
Clos_0895
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: bce:BC0791 NADH dehydrogenase.
  
  
 0.711
Clos_1960
PFAM: response regulator receiver; CheW domain protein; KEGG: bha:BH2262 modulation of CheA activity in response to attractants (chemotaxis protein).
       0.511
Clos_1735
TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: cdf:CD2493 selenocysteine-specific elongation factor.
 
   
 0.490
Clos_2149
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: drm:Dred_1278 2-hydroxyglutaryl-CoA dehydratase, D-component.
 
    0.481
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.428
Clos_0953
KEGG: cbo:CBO1255 component of glycine reductase complex.
  
     0.422
Clos_1964
PFAM: S-layer domain protein; KEGG: tte:TTE0861 hypothetical protein.
       0.409
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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