Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Clos_0237 | Clos_1983 | PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: amt:Amet_4657 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein. | PFAM: FeoA family protein; KEGG: mta:Moth_1407 FeoA. | 0.493 |
Clos_1842 | Clos_1843 | PFAM: nucleoside recognition domain protein; KEGG: gka:GK3080 hypothetical protein. | PFAM: nucleoside recognition domain protein; KEGG: bcl:ABC3053 hypothetical protein. | 0.996 |
Clos_1842 | Clos_1983 | PFAM: nucleoside recognition domain protein; KEGG: gka:GK3080 hypothetical protein. | PFAM: FeoA family protein; KEGG: mta:Moth_1407 FeoA. | 0.625 |
Clos_1843 | Clos_1842 | PFAM: nucleoside recognition domain protein; KEGG: bcl:ABC3053 hypothetical protein. | PFAM: nucleoside recognition domain protein; KEGG: gka:GK3080 hypothetical protein. | 0.996 |
Clos_1843 | Clos_1983 | PFAM: nucleoside recognition domain protein; KEGG: bcl:ABC3053 hypothetical protein. | PFAM: FeoA family protein; KEGG: mta:Moth_1407 FeoA. | 0.625 |
Clos_1982 | Clos_1983 | PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein. | PFAM: FeoA family protein; KEGG: mta:Moth_1407 FeoA. | 0.448 |
Clos_1982 | Clos_1984 | PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein. | GTP-binding protein HSR1-related; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. | 0.413 |
Clos_1983 | Clos_0237 | PFAM: FeoA family protein; KEGG: mta:Moth_1407 FeoA. | PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: amt:Amet_4657 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein. | 0.493 |
Clos_1983 | Clos_1842 | PFAM: FeoA family protein; KEGG: mta:Moth_1407 FeoA. | PFAM: nucleoside recognition domain protein; KEGG: gka:GK3080 hypothetical protein. | 0.625 |
Clos_1983 | Clos_1843 | PFAM: FeoA family protein; KEGG: mta:Moth_1407 FeoA. | PFAM: nucleoside recognition domain protein; KEGG: bcl:ABC3053 hypothetical protein. | 0.625 |
Clos_1983 | Clos_1982 | PFAM: FeoA family protein; KEGG: mta:Moth_1407 FeoA. | PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein. | 0.448 |
Clos_1983 | Clos_1984 | PFAM: FeoA family protein; KEGG: mta:Moth_1407 FeoA. | GTP-binding protein HSR1-related; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. | 0.980 |
Clos_1983 | Clos_2714 | PFAM: FeoA family protein; KEGG: mta:Moth_1407 FeoA. | TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: ppr:PBPRB1904 hypothetical ferrous ion transport protein B. | 0.892 |
Clos_1984 | Clos_1982 | GTP-binding protein HSR1-related; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. | PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein. | 0.413 |
Clos_1984 | Clos_1983 | GTP-binding protein HSR1-related; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. | PFAM: FeoA family protein; KEGG: mta:Moth_1407 FeoA. | 0.980 |
Clos_2714 | Clos_1983 | TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: ppr:PBPRB1904 hypothetical ferrous ion transport protein B. | PFAM: FeoA family protein; KEGG: mta:Moth_1407 FeoA. | 0.892 |