Clos_2005 protein (Alkaliphilus oremlandii) - STRING interaction network

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Clos_2005

PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein. (66 aa)

Predicted Functional Partners:

rplW

0.707

rpsQ

0.671

rpsL

0.665

rpsS

0.647

rpmC

0.637

rplO

0.621

rplB

0.611

rpsE

0.601

rplN

0.598

rpsC

0.594

Your Current Organism:

Alkaliphilus oremlandii

NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Clos_2005	rplB	Clos_2005	Clos_0495	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein.	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.611
Clos_2005	rplN	Clos_2005	Clos_0502	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.598
Clos_2005	rplO	Clos_2005	Clos_0511	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.621
Clos_2005	rplW	Clos_2005	Clos_0494	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein.	Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.707
Clos_2005	rpmC	Clos_2005	Clos_0500	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein.	PFAM: ribosomal protein L29; KEGG: tte:TTE2284 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.637
Clos_2005	rpsC	Clos_2005	Clos_0498	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.594
Clos_2005	rpsE	Clos_2005	Clos_0509	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein.	Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.601
Clos_2005	rpsL	Clos_2005	Clos_0487	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.665
Clos_2005	rpsQ	Clos_2005	Clos_0501	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.671
Clos_2005	rpsS	Clos_2005	Clos_0496	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.647
rplB	Clos_2005	Clos_0495	Clos_2005	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein.	0.611
rplB	rplN	Clos_0495	Clos_0502	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
rplB	rplO	Clos_0495	Clos_0511	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.997
rplB	rplW	Clos_0495	Clos_0494	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.998
rplB	rpmC	Clos_0495	Clos_0500	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	PFAM: ribosomal protein L29; KEGG: tte:TTE2284 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.997
rplB	rpsC	Clos_0495	Clos_0498	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplB	rpsE	Clos_0495	Clos_0509	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.998
rplB	rpsL	Clos_0495	Clos_0487	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.997
rplB	rpsQ	Clos_0495	Clos_0501	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.997
rplB	rpsS	Clos_0495	Clos_0496	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999

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