Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Clos_2007Hypothetical protein; KEGG: cpr:CPR_1870 small, acid-soluble spore protein, alpha/beta family. (66 aa)    
Predicted Functional Partners:
Clos_2006
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cdf:CD3220 putative methyltransferase.
       0.851
Clos_2016
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cpr:CPR_1877 single-strand binding domain protein.
  
     0.747
Clos_0284
PFAM: Peptidoglycan-binding LysM; KEGG: amt:Amet_4605 peptidoglycan-binding LysM.
  
     0.646
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
   
 0.602
Clos_1615
KEGG: cdf:CD1199 putative stage III sporulation protein AH.
  
     0.571
Clos_1556
PFAM: regulatory protein MerR; KEGG: cth:Cthe_0804 transcriptional regulator, MerR family.
  
     0.538
Clos_0291
TIGRFAM: Sporulation stage II protein R; KEGG: amt:Amet_4592 sporulation stage II, protein R.
  
     0.528
Clos_2026
KEGG: cdf:CD3250 hypothetical protein.
  
     0.519
Clos_2005
PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein.
     
 0.492
Clos_2041
PFAM: NMT1/THI5 like domain protein; KEGG: ctc:CTC00407 ABC transporter substrate-binding protein.
  
     0.471
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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