STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_2014PFAM: Abortive infection protein; KEGG: tte:TTE2577 predicted metal-dependent membrane protease. (314 aa)    
Predicted Functional Partners:
Clos_2278
KEGG: cth:Cthe_1300 hypothetical protein.
  
     0.600
Clos_2488
PFAM: FlgN family protein; KEGG: cth:Cthe_2216 hypothetical protein.
  
     0.580
Clos_1484
KEGG: ehi:388.t00006 hypothetical protein Pfam: PH DUF1090 MAP7 DUF904 DUF1410 UVR PROSITE: GLU_RICH LYS_RICH PH_DOMAIN.
  
     0.579
Clos_2794
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: cdf:CD3653 hypothetical protein.
  
     0.578
Clos_2780
KEGG: tte:TTE2685 hypothetical protein.
  
     0.567
Clos_1784
PFAM: NUDIX hydrolase; KEGG: amt:Amet_2228 NUDIX hydrolase.
  
     0.558
Clos_2012
Hypothetical protein; KEGG: sth:STH879 conserved domain protein, proline-rich.
 
     0.557
Clos_1674
KEGG: tte:TTE1676 hypothetical protein.
  
     0.553
Clos_2656
KEGG: tte:TTE0114 hypothetical protein.
 
     0.547
Clos_0644
PFAM: nitroreductase; KEGG: cdf:CD2572 putative nitroreductase.
 
  
 0.544
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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